biolockj

Class BioModuleFactory

java.lang.Object

biolockj.BioModuleFactory

public class BioModuleFactory
extends Object

This class initializes pipeline modules, starting with those in the Config file and adding the prerequisite and post-requisite modules.

Method Summary

Modifier and Type	Method and Description
static List<BioModule>	buildPipeline() Build all modules for the pipeline.
protected List<String>	getPostRequisites(BioModule module) This method returns all module post-requisites (including post-requisites of the post-requisites).
protected List<String>	getPreRequisites(BioModule module) This method returns all module prerequisites (including prerequisites of the prerequisites).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getPostRequisites

protected List<String> getPostRequisites(BioModule module)
                                  throws Exception

This method returns all module post-requisites (including post-requisites of the post-requisites).

Parameters:

module - Current BioModule

Returns:

List of post-requisite module names

Throws:

Exception - if runtime errors occur

getPreRequisites

protected List<String> getPreRequisites(BioModule module)
                                 throws Exception

This method returns all module prerequisites (including prerequisites of the prerequisites).

Parameters:

module - Current BioModule

Returns:

List of prerequisite module names

Throws:

Exception - if runtime errors occur

buildPipeline

public static List<BioModule> buildPipeline()
                                     throws Exception

Build all modules for the pipeline.

Returns:

List of BioModules

Throws:

Exception - if errors occur