Uses of Class
biolockj.exception.ConfigNotFoundException

Packages that use ConfigNotFoundException

Package	Description
biolockj	The root biolockj package contains core classes used by all BioLockJ pipelines.
biolockj.util	Static utilities centralize and organize reusable core methods.

Uses of ConfigNotFoundException in biolockj

Methods in biolockj that throw ConfigNotFoundException

Modifier and Type	Method and Description
static boolean	Config.requireBoolean(BioModule module, String property) Required to return a valid boolean or
static Double	Config.requireDoubleVal(BioModule module, String property) Requires valid double value
static Integer	Config.requireInteger(BioModule module, String property) Requires valid integer value
static List<String>	Config.requireList(BioModule module, String property) Require valid list property
static Double	Config.requirePositiveDouble(BioModule module, String property) Require valid positive double value
static Integer	Config.requirePositiveInteger(BioModule module, String property) Require valid positive integer value
static Set<String>	Config.requireSet(BioModule module, String property) Require valid Set value
static String	Config.requireString(BioModule module, String property) Require valid String value

Uses of ConfigNotFoundException in biolockj.util

Methods in biolockj.util that throw ConfigNotFoundException

Modifier and Type	Method and Description
static boolean	DemuxUtil.barcodeInHeader() Return TRUE if Config is setup to demultiplex the sequence data based on bar-codes in the sequence headers.
static boolean	DemuxUtil.barcodeInMapping() Return TRUE if Config is setup to demultiplex the sequence data based on bar-codes in the sequence itself.
static boolean	DemuxUtil.barcodeInSeq() Return TRUE if Config is setup to demultiplex the sequence data based on bar-codes in the sequence itself.
static Boolean	DemuxUtil.doDemux() Return TRUE if Config is setup to demultiplex the sequence data.
static String	SeqUtil.getSeqType() Get sequence type
static List<String>	TaxaUtil.initTaxaLevels() Set taxonomy levels ordered by level, from highest to lowest.
static boolean	BioLockJUtil.pipelineInputType(String type) Convenience method to check pipeline input file type.