Uses of Package
biolockj.module.classifier

Packages that use biolockj.module.classifier

Package	Description
biolockj.module.classifier	This package contains Classifier specific BioModules that build bash scripts to generate taxonomy reports from the sequences files.
biolockj.module.classifier.r16s	This package contains RDP and QIIME classifier modules that assign taxonomy to 16s sequences. Output file formats are classifier specific so classifier requires a unique post-requisite ParserModule.
biolockj.module.classifier.wgs	This package contains Kraken, Kraken2, Humann2, MetaPhlAn classifier modules that assign taxonomy to WGS data. As with all BioLockJ classifiers, these modules generate raw classifier output files from the sequence data. Include the corresponding ParserModule in the Config file to generate standardized OTU abundance tables.
biolockj.module.implicit.qiime	This package contains BioModules that are implicitly added to QIIME pipeline as needed.
biolockj.util	Static utilities centralize and organize reusable core methods.

Classes in biolockj.module.classifier used by biolockj.module.classifier

Class and Description
ClassifierModule Classifier BioModules build one or more bash scripts to call the application on sequence files.

Classes in biolockj.module.classifier used by biolockj.module.classifier.r16s

Class and Description
ClassifierModule Classifier BioModules build one or more bash scripts to call the application on sequence files.
ClassifierModuleImpl This is the superclass for all WGS and 16S biolockj.module.classifier BioModules.

Classes in biolockj.module.classifier used by biolockj.module.classifier.wgs

Class and Description
ClassifierModule Classifier BioModules build one or more bash scripts to call the application on sequence files.
ClassifierModuleImpl This is the superclass for all WGS and 16S biolockj.module.classifier BioModules.

Classes in biolockj.module.classifier used by biolockj.module.implicit.qiime

Class and Description
ClassifierModule Classifier BioModules build one or more bash scripts to call the application on sequence files.
ClassifierModuleImpl This is the superclass for all WGS and 16S biolockj.module.classifier BioModules.

Classes in biolockj.module.classifier used by biolockj.util

Class and Description
ClassifierModule Classifier BioModules build one or more bash scripts to call the application on sequence files.