| Class | Description |
|---|---|
| CompileOtuCounts |
This BioModule compiles the counts from all OTU count files into a single summary OTU count file containing OTU
counts for the entire dataset.
|
| OtuCountModule |
OtuCount modules reads OTU count assignment tables (1 file/sample) with 2 columns.
Col1: Full OTU pathway spanning top to bottom level Col2: Count (# of reads) for the sample. |
| RarefyOtuCounts |
This BioModule applies a mean iterative post-OTU classification rarefication algorithm so that each output sample
will have approximately the same number of OTUs.
|
| RemoveLowOtuCounts |
This BioModule set low OTU counts below a configured threshold to zero.
These low sample counts are assumed to be miscategorized or contaminents. |
| RemoveScarceOtuCounts |
This BioModule removes scarce OTUs not found in enough samples.
The OTU must be found in a configurable percentage of samples. |