Uses of Class
biolockj.module.report.r.R_Module

Packages that use R_Module

Package	Description
biolockj.module.report.r	This package contains BioModules that build pipeline reports from the standard OTU abundance tables by generating R scripts to produce the summary statistics and data visualizations output to PDF files.

Uses of R_Module in biolockj.module.report.r

Subclasses of R_Module in biolockj.module.report.r

Modifier and Type	Class and Description
class	R_CalculateStats This BioModule is used to build the R script used to generate taxonomy statistics and plots.
class	R_PlotEffectSize This BioModule is used to run the R script used to generate OTU-metadata fold-change-barplots for each binary report field.
class	R_PlotMds This BioModule is used to build the R script used to generate MDS plots for each report field and each taxonomy level configured.
class	R_PlotOtus This BioModule is used to build the R script used to generate OTU-metadata box-plots and scatter-plots for each report field and taxonomy level.
class	R_PlotPvalHistograms This BioModule is used to build the R script used to generate p-value histograms for each report field and each taxonomy level configured.