biolockj.node

Class JsonNode

java.lang.Object

biolockj.node.JsonNode

All Implemented Interfaces:

Serializable, Comparable<JsonNode>

public class JsonNode
extends Object
implements Serializable, Comparable<JsonNode>

Each JsonNode holds an OTU, count, and link to its parent node.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
JsonNode(String taxa, Long count, JsonNode parent, String level) JsonNode Constructor

Method Summary

Modifier and Type	Method and Description
void	addCount(Long count) Add taxa count
int	compareTo(JsonNode node)
boolean	equals(Object o)
Long	getCount() Getter method for count
String	getLevel() Getter method for level
JsonNode	getParent() Getter method for parent
HashMap<String,Double>	getStats() Getter method for stats
String	getTaxa() Getter method for taxa
int	hashCode()
void	report() Print node info.
void	setLevel(String level) Setter method for level
void	setParent(JsonNode parent) Setter method for parent
void	setTaxa(String taxa) Setter method for taxa
void	updateStats(String name, Double val) Update stats, add val to key name.

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JsonNode

public JsonNode(String taxa,
                Long count,
                JsonNode parent,
                String level)

JsonNode Constructor

Parameters:

taxa - Taxa name

count - Taxa count

parent - Taxa parent

level - Taxa level

Method Detail

addCount

public void addCount(Long count)

Add taxa count

Parameters:

count - Taxa count

compareTo

public int compareTo(JsonNode node)

Specified by:

compareTo in interface Comparable<JsonNode>

equals

public boolean equals(Object o)

Overrides:

equals in class Object

getCount

public Long getCount()

Getter method for count

Returns:

OTU count

getLevel

public String getLevel()

Getter method for level

Returns:

JsonNode level

getParent

public JsonNode getParent()

Getter method for parent

Returns:

JsonNode parent

getStats

public HashMap<String,Double> getStats()

Getter method for stats

Returns:

Map of OTU stats

getTaxa

public String getTaxa()

Getter method for taxa

Returns:

Taxa Name

hashCode

public int hashCode()

Overrides:

hashCode in class Object

report

public void report()

Print node info.

setLevel

public void setLevel(String level)

Setter method for level

Parameters:

level - Taxonomy level

setParent

public void setParent(JsonNode parent)

Setter method for parent

Parameters:

parent - Node parent

setTaxa

public void setTaxa(String taxa)

Setter method for taxa

Parameters:

taxa - Taxa name

updateStats

public void updateStats(String name,
                        Double val)

Update stats, add val to key name.

Parameters:

name - Statistic name

val - Statistic value