| Package | Description |
|---|---|
| biolockj.module.classifier.r16s |
This package contains RDP and QIIME classifier modules that assign taxonomy to 16s sequences.
Output file formats are classifier specific so classifier requires a unique post-requisite ParserModule. |
| Modifier and Type | Class and Description |
|---|---|
class |
QiimeClosedRefClassifier
This BioModule executes the QIIME script pick_closed_reference_otus.py on a FastA sequence files.
|
class |
QiimeDeNovoClassifier
This module runs the QIIME pick_de_novo_otus.py script on FastA sequence files in a single script so it is important
to allocate sufficient job resources if running in a clustered environment.
|
class |
QiimeOpenRefClassifier
This module runs the QIIME pick_open_reference_otus.py script on FastA sequence files in a single script so it is
important to allocate sufficient job resources if running in a clustered environment.
|