- WARN - Static variable in class biolockj.Log
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WARN log message type
- warn(Class<?>, String) - Static method in class biolockj.Log
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Print log level WARN message.
- writeDataToFile(File, List<String>, List<String>, List<List<String>>) - Static method in class biolockj.module.report.taxa.NormalizeTaxaTables
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Write transformed data to file
- writeNewScript(String, String) - Static method in class biolockj.module.report.r.R_Module
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This method generates an R script with the given rCode saved to the given path.
- writeNodeAndChildren(JsonNode, boolean, LinkedHashMap<String, TreeSet<JsonNode>>, int) - Method in class biolockj.module.report.JsonReport
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Build lines of text output for the Json Report file.
- writePrimaryScript() - Method in class biolockj.module.report.r.R_Module
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Initialize the R script by creating the MAIN R script that calls source on the BaseScript and adds the R code for
the runProgarm() method.
- writeScript(BufferedWriter, String) - Static method in class biolockj.module.report.r.R_Module
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This method formats the rCode to indent code blocks surround by curly-braces "{ }"
- writeScript(BufferedWriter, List<String>) - Static method in class biolockj.util.BashScriptBuilder
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This method formats the bash script to indent if statement code blocks